ValidParameters::ValidParameters() {
try {
- parameters["distfile"] = "distfile";
+ parameters["phylipfile"] = "phylipfile";
+ parameters["columnfile"] = "columnfile";
parameters["listfile"] = "listfile";
parameters["rabundfile"] = "rabundfile";
parameters["sabundfile"] = "sabundfile";
parameters["namefile"] = "namefile";
parameters["groupfile"] = "groupfile";
parameters["orderfile"] = "orderfile";
+ parameters["fastafile"] = "fastafile";
parameters["fileroot"] = "fileroot";
parameters["cutoff"] = "cutoff";
parameters["method"] = "method";