parameters["group"] = "group";
parameters["order"] = "order";
parameters["fasta"] = "fasta";
- parameters["treefile"] = "treefile";
+ parameters["tree"] = "tree";
parameters["fileroot"] = "fileroot";
parameters["cutoff"] = "cutoff";
parameters["method"] = "method";
parameters["shared"] = "shared";
parameters["summary"] = "summary";
parameters["sharedsummary"] = "sharedsummary";
-
+ parameters["random"] = "random";
+ parameters["groups"] = "groups";
+ parameters["calc"] = "calc";
+
}
catch(exception& e) {
cout << "Standard Error: " << e.what() << " has occurred in the ValidParameters class Function ValidParameters. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
if ((parameters.find(parameter)) != (parameters.end())) {
return true;
}else{
- cout << parameter << " is not a valid parameter in Mothur." << endl;
+ cout << parameter << " is not a valid parameter in Mothur. Valid parameters are " << endl;
+ for (it = parameters.begin(); it != parameters.end(); it++) {
+ cout << it->first << ", ";
+ }
+ cout << endl;
+
return false;
}