changed hard parameter in cluster commands

[mothur.git] / validparameter.cpp

diff --git a/validparameter.cpp b/validparameter.cpp
index 2d29ee3f668ee1817cb71c82189c2a8c6f61cf00..163423b79dddc49d99ab38aa197291d0b1b254e7 100644 (file)
--- a/validparameter.cpp
+++ b/validparameter.cpp
@@ -209,21 +209,29 @@ string ValidParameters::validFile(map<string, string> container, string paramete
                        if(isFile == true) {
                        
                        #ifdef USE_MPI  
-                               int pid;
+                               int pid, processors;
+                               MPI_Status status;
                                MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are
+                               MPI_Comm_size(MPI_COMM_WORLD, &processors);
                                
                                if (pid == 0) {
                        #endif
 
                                ableToOpen = openInputFile(it->second, in);
-
-                               if (ableToOpen == 1) { return "not open"; }
                                in.close();
-                               
+
                        #ifdef USE_MPI  
+                                       for(int i = 1; i < processors; i++) { 
+                                               MPI_Send(&ableToOpen, 1, MPI_INT, i, 2001, MPI_COMM_WORLD);
+                                       }
+                               }else {
+                                       MPI_Recv(&ableToOpen, 1, MPI_INT, 0, 2001, MPI_COMM_WORLD, &status);
                                }
+                               
+                               MPI_Barrier(MPI_COMM_WORLD); //make everyone wait - just in case
                        #endif
-
+                       
+                               if (ableToOpen == 1) { return "not open"; }
                        }
                }else { return "not found"; }
                
@@ -260,12 +268,6 @@ void ValidParameters::initParameterRanges() {
                string itersArray[] = {">=","10", "<","NA", "between"};
                parameterRanges["iters"] = addParameters(itersArray, rangeSize);
 
-               string freqArray[] = {">=","1", "<","NA", "between"};
-               parameterRanges["freq"] = addParameters(freqArray, rangeSize);
-
-               //string lineArray[] = {">=","1", "<","NA", "between"};
-               //parameterRanges["line"] = addParameters(lineArray, rangeSize);
-
                string abundArray[] = {">=","5", "<","NA", "between"};
                parameterRanges["abund"] = addParameters(abundArray, rangeSize);