I've changed the listfile, sabundfile, etc. option handles to not need the "file...

[mothur.git] / validparameter.cpp

diff --git a/validparameter.cpp b/validparameter.cpp
index b58a8ff8878b76da789a0f2a1ebc1784a11781bf..10dad74017fd33627fa9df4375b8cffc32170b8b 100644 (file)
--- a/validparameter.cpp
+++ b/validparameter.cpp
@@ -14,7 +14,7 @@
 ValidParameters::ValidParameters() {
        try {
        
-               parameters["phylipfile"]                = "phylipfile";
+               parameters["phylip"]                    = "phylip";
                parameters["columnfile"]                = "columnfile";
                parameters["listfile"]                  = "listfile"; 
                parameters["rabundfile"]                = "rabundfile"; 
@@ -23,6 +23,7 @@ ValidParameters::ValidParameters() {
                parameters["groupfile"]                 = "groupfile"; 
                parameters["orderfile"]                 = "orderfile"; 
                parameters["fastafile"]                 = "fastafile"; 
+               parameters["treefile"]                  = "treefile";
                parameters["fileroot"]                  = "fileroot";
                parameters["cutoff"]                    = "cutoff"; 
                parameters["method"]                    = "method";