*/
using namespace std;
-#include <string>
-#include <iostream>
-#include <map>
+#include "mothur.h"
//This class contains a list of all valid commands in Mothur.
//It has a function which will tell you if your command is valid.
ValidCommands();
~ValidCommands();
bool isValidCommand(string);
+ void printCommands(ostream&);
private:
map<string, string> commands;
+ map<string, string>::iterator it;
};