fixed a bug in calculating the # of ambig bases

[mothur.git] / validcommands.h

diff --git a/validcommands.h b/validcommands.h
index 658d5e4fccbc6455d7f3a8e6b247baab2ed5295b..e59316fca472b419734c0c1e65036b3d2b684b66 100644 (file)
--- a/validcommands.h
+++ b/validcommands.h
@@ -1,3 +1,6 @@
+#ifndef VALIDCOMMANDS_H
+#define VALIDCOMMANDS_H
+
 /*
  *  validcommands.h
  *  Dotur
@@ -8,10 +11,7 @@
  */
 using namespace std;
 
-#include <Carbon/Carbon.h>
-#include <string>
-#include <iostream>
-#include <map>
+#include "mothur.h"
 
 //This class contains a list of all valid commands in Mothur.  
 //It has a function which will tell you if your command is valid.
@@ -23,7 +23,11 @@ class ValidCommands {
                ValidCommands();
                ~ValidCommands();
                bool isValidCommand(string);
+               void printCommands(ostream&);
        private:
                map<string, string> commands;
+               map<string, string>::iterator it;
+
+};
 
-};
\ No newline at end of file
+#endif