commands["unifrac.unweighted"] = "unifrac.unweighted";
commands["libshuff"] = "libshuff";
commands["tree.shared"] = "tree.shared";
- commands["heatmap"] = "heatmap";
+ commands["heatmap.bin"] = "heatmap.bin";
+ commands["heatmap.sim"] = "heatmap.sim";
commands["venn"] = "venn";
commands["get.group"] = "get.group";
commands["get.label"] = "get.label";
commands["align.seqs"] = "align.seqs";
commands["summary.seqs"] = "summary.seqs";
commands["screen.seqs"] = "screen.seqs";
+ commands["reverse.seqs"] = "reverse.seqs";
+ commands["trim.seqs"] = "trim.seqs";
commands["quit"] = "quit";