got rid of extra temp files in dist.seqs

[mothur.git] / validcommands.cpp

diff --git a/validcommands.cpp b/validcommands.cpp
index 6439e9bfca12a19751b44cd0a570cdd266d81105..e5f93a91e125798f556c8769cbe51af9ae0e3e65 100644 (file)
--- a/validcommands.cpp
+++ b/validcommands.cpp
@@ -20,7 +20,7 @@ ValidCommands::ValidCommands() {
                commands["bin.seqs"]                    = "bin.seqs"; 
                commands["get.oturep"]                  = "get.oturep";
                commands["cluster"]                             = "cluster"; 
-               commands["deconvolute"]                 = "deconvolute"; 
+               commands["unique.seqs"]                 = "unique.seqs"; 
                commands["dist.seqs"]                   = "dist.seqs";
                commands["dist.shared"]                 = "dist.shared";
                commands["collect.single"]              = "collect.single"; 
@@ -34,7 +34,8 @@ ValidCommands::ValidCommands() {
                commands["unifrac.unweighted"]  = "unifrac.unweighted"; 
                commands["libshuff"]                    = "libshuff";
                commands["tree.shared"]                 = "tree.shared";
-               commands["heatmap"]                             = "heatmap";
+               commands["heatmap.bin"]                 = "heatmap.bin";
+               commands["heatmap.sim"]                 = "heatmap.sim";
                commands["venn"]                                = "venn";
                commands["get.group"]           = "get.group";
                commands["get.label"]           = "get.label";
@@ -47,6 +48,9 @@ ValidCommands::ValidCommands() {
                commands["filter.seqs"]                 = "filter.seqs";
                commands["align.seqs"]                  = "align.seqs";
                commands["summary.seqs"]                = "summary.seqs";
+               commands["screen.seqs"]                 = "screen.seqs";
+               commands["reverse.seqs"]                = "reverse.seqs";
+               commands["trim.seqs"]                   = "trim.seqs";
                commands["quit"]                                = "quit";