commands["read.dist"] = "read.dist";
commands["read.otu"] = "read.otu";
commands["read.tree"] = "read.tree";
- commands["read.shared"] = "read.shared";
commands["cluster"] = "cluster";
commands["deconvolute"] = "deconvolute";
- commands["parsimony"] = "parsimony";
- commands["help"] = "help";
- commands["quit"] = "quit";
commands["collect.single"] = "collect.single";
commands["collect.shared"] = "collect.shared";
- commands["get.group"] = "get.group";
- commands["get.label"] = "get.label";
- commands["get.line"] = "get.line";
commands["rarefaction.single"] = "rarefaction.single";
commands["rarefaction.shared"] = "rarefaction.shared";
commands["summary.single"] = "summary.single";
commands["summary.shared"] = "summary.shared";
+ commands["parsimony"] = "parsimony";
commands["unifrac.weighted"] = "unifrac.weighted";
commands["unifrac.unweighted"] = "unifrac.unweighted";
+ commands["libshuff"] = "libshuff";
+ commands["heatmap"] = "heatmap";
+ commands["get.group"] = "get.group";
+ commands["get.label"] = "get.label";
+ commands["get.line"] = "get.line";
+ commands["help"] = "help";
+ commands["quit"] = "quit";
}