shared["braycurtis"] = "braycurtis";
shared["odum"] = "odum";
shared["canberra"] = "canberra";
- shared["stricteuclidean"] = "stricteuclidean";
- shared["strictchord"] = "strictchord";
+ shared["structeuclidean"] = "structeuclidean";
+ shared["structchord"] = "structchord";
shared["hellinger"] = "hellinger";
shared["manhattan"] = "manhattan";
- shared["strictpearson"] = "strictpearson";
+ shared["structpearson"] = "structpearson";
shared["soergel"] = "soergel";
shared["spearman"] = "spearman";
- shared["strictkulczynski"] = "strictkulczynski";
+ shared["structkulczynski"] = "structkulczynski";
+ shared["structchi2"] = "structchi2";
shared["speciesprofile"] = "speciesprofile";
shared["hamming"] = "hamming";
+ shared["gower"] = "gower";
+ shared["memchi2"] = "memchi2";
+ shared["memchord"] = "memchord";
+ shared["memeuclidean"] = "memeuclidean";
+ shared["mempearson"] = "mempearson";
shared["default"] = "default";
}
catch(exception& e) {
sharedsummary["braycurtis"] = "braycurtis";
sharedsummary["odum"] = "odum";
sharedsummary["canberra"] = "canberra";
- sharedsummary["stricteuclidean"] = "stricteuclidean";
- sharedsummary["strictchord"] = "strictchord";
+ sharedsummary["structeuclidean"] = "structeuclidean";
+ sharedsummary["structchord"] = "structchord";
sharedsummary["hellinger"] = "hellinger";
sharedsummary["manhattan"] = "manhattan";
- sharedsummary["strictpearson"] = "strictpearson";
- sharedsummary["strictkulczynski"] = "strictkulczynski";
+ sharedsummary["structpearson"] = "structpearson";
+ sharedsummary["structkulczynski"] = "structkulczynski";
+ sharedsummary["structchi2"] = "structchi2";
sharedsummary["soergel"] = "soergel";
sharedsummary["spearman"] = "spearman";
sharedsummary["speciesprofile"] = "speciesprofile";
sharedsummary["hamming"] = "hamming";
+ sharedsummary["gower"] = "gower";
+ sharedsummary["memchi2"] = "memchi2";
+ sharedsummary["memchord"] = "memchord";
+ sharedsummary["memeuclidean"] = "memeuclidean";
+ sharedsummary["mempearson"] = "mempearson";
sharedsummary["default"] = "default";
}
catch(exception& e) {
/********************************************************************/
void ValidCalculators::initialTreeGroups() {
try {
+ treegroup["sharedsobs"] = "sharedsobs";
+ treegroup["sharedchao"] = "sharedchao";
+ treegroup["sharedace"] = "sharedace";
treegroup["jabund"] = "jabund";
treegroup["sorabund"] = "sorabund";
treegroup["jclass"] = "jclass";
treegroup["sorest"] = "sorest";
treegroup["thetayc"] = "thetayc";
treegroup["thetan"] = "thetan";
+ treegroup["kstest"] = "kstest";
+ treegroup["whittaker"] = "whittaker";
+ treegroup["sharednseqs"] = "sharednseqs";
+ treegroup["ochiai"] = "ochiai";
+ treegroup["anderberg"] = "anderberg";
+ treegroup["kulczynski"] = "kulczynski";
+ treegroup["kulczynskicody"] = "kulczynskicody";
+ treegroup["lennon"] = "lennon";
treegroup["morisitahorn"] = "morisitahorn";
treegroup["braycurtis"] = "braycurtis";
+ treegroup["odum"] = "odum";
+ treegroup["canberra"] = "canberra";
+ treegroup["structeuclidean"] = "structeuclidean";
+ treegroup["structchord"] = "structchord";
+ treegroup["hellinger"] = "hellinger";
+ treegroup["manhattan"] = "manhattan";
+ treegroup["structpearson"] = "structpearson";
+ treegroup["structkulczynski"] = "structkulczynski";
+ treegroup["structchi2"] = "structchi2";
+ treegroup["soergel"] = "soergel";
+ treegroup["spearman"] = "spearman";
+ treegroup["speciesprofile"] = "speciesprofile";
+ treegroup["hamming"] = "hamming";
+ treegroup["gower"] = "gower";
+ treegroup["memchi2"] = "memchi2";
+ treegroup["memchord"] = "memchord";
+ treegroup["memeuclidean"] = "memeuclidean";
+ treegroup["mempearson"] = "mempearson";
+
}
catch(exception& e) {
m->errorOut(e, "ValidCalculator", "initialTreeGroups");
/********************************************************************/
void ValidCalculators::initialMatrix() {
try {
- matrix["jabund"] = "jabund";
+ matrix["sharedsobs"] = "sharedsobs";
+ matrix["sharedchao"] = "sharedchao";
+ matrix["sharedace"] = "sharedace";
+ matrix["jabund"] = "jabund";
matrix["sorabund"] = "sorabund";
- matrix["jclass"] = "jclass";
+ matrix["jclass"] = "jclass";
matrix["sorclass"] = "sorclass";
matrix["jest"] = "jest";
- matrix["sorest"] = "sorest";
+ matrix["sorest"] = "sorest";
matrix["thetayc"] = "thetayc";
- matrix["thetan"] = "thetan";
+ matrix["thetan"] = "thetan";
+ matrix["kstest"] = "kstest";
+ matrix["whittaker"] = "whittaker";
+ matrix["sharednseqs"] = "sharednseqs";
+ matrix["ochiai"] = "ochiai";
+ matrix["anderberg"] = "anderberg";
+ matrix["kulczynski"] = "kulczynski";
+ matrix["kulczynskicody"] = "kulczynskicody";
+ matrix["lennon"] = "lennon";
matrix["morisitahorn"] = "morisitahorn";
- matrix["braycurtis"] = "braycurtis";
+ matrix["braycurtis"] = "braycurtis";
+ matrix["odum"] = "odum";
+ matrix["canberra"] = "canberra";
+ matrix["structeuclidean"] = "structeuclidean";
+ matrix["structchord"] = "structchord";
+ matrix["hellinger"] = "hellinger";
+ matrix["manhattan"] = "manhattan";
+ matrix["structpearson"] = "structpearson";
+ matrix["structkulczynski"] = "structkulczynski";
+ matrix["structchi2"] = "structchi2";
+ matrix["soergel"] = "soergel";
+ matrix["spearman"] = "spearman";
+ matrix["speciesprofile"] = "speciesprofile";
+ matrix["hamming"] = "hamming";
+ matrix["gower"] = "gower";
+ matrix["memchi2"] = "memchi2";
+ matrix["memchord"] = "memchord";
+ matrix["memeuclidean"] = "memeuclidean";
+ matrix["mempearson"] = "mempearson";
+
}
catch(exception& e) {
m->errorOut(e, "ValidCalculator", "initialMatrix");