more changes to error.seqs command and quality scores classses

[mothur.git] / validcalculator.cpp

diff --git a/validcalculator.cpp b/validcalculator.cpp
index bc8c4b8d7ab4b753cfa3f75a7c7da0b8ba740bc0..6242d5aaf5c7e49eb54a75b26a0eb48425302123 100644 (file)
--- a/validcalculator.cpp
+++ b/validcalculator.cpp
@@ -260,6 +260,24 @@ void ValidCalculators::initialShared() {
                shared["lennon"]                                = "lennon";
                shared["morisitahorn"]                  = "morisitahorn";
                shared["braycurtis"]                    = "braycurtis";
+               shared["odum"]                                  = "odum";
+               shared["canberra"]                              = "canberra";
+               shared["structeuclidean"]               = "structeuclidean";
+               shared["structchord"]                   = "structchord";
+               shared["hellinger"]                             = "hellinger";
+               shared["manhattan"]                             = "manhattan";
+               shared["structpearson"]                 = "structpearson";
+               shared["soergel"]                               = "soergel";
+               shared["spearman"]                              = "spearman";
+               shared["structkulczynski"]              = "structkulczynski";
+               shared["structchi2"]                    = "structchi2";
+               shared["speciesprofile"]                = "speciesprofile";
+               shared["hamming"]                               = "hamming";
+               shared["gower"]                                 = "gower";
+               shared["memchi2"]                               = "memchi2";
+               shared["memchord"]                              = "memchord";
+               shared["memeuclidean"]                  = "memeuclidean";
+               shared["mempearson"]                    = "mempearson";
                shared["default"]                   = "default";
        }
        catch(exception& e) {
@@ -338,7 +356,7 @@ void ValidCalculators::initialSharedSummary() {
                sharedsummary["sharedchao"]                             = "sharedchao";
                sharedsummary["sharedace"]                              = "sharedace";
                sharedsummary["jabund"]                                 = "jabund";
-               sharedsummary["sorabund"]                       = "sorabund";
+               sharedsummary["sorabund"]                               = "sorabund";
                sharedsummary["jclass"]                                 = "jclass";
                sharedsummary["sorclass"]                               = "sorclass";
                sharedsummary["jest"]                                   = "jest";
@@ -355,6 +373,24 @@ void ValidCalculators::initialSharedSummary() {
                sharedsummary["lennon"]                                 = "lennon";
                sharedsummary["morisitahorn"]                   = "morisitahorn";
                sharedsummary["braycurtis"]                             = "braycurtis";
+               sharedsummary["odum"]                                   = "odum";
+               sharedsummary["canberra"]                               = "canberra";
+               sharedsummary["structeuclidean"]                = "structeuclidean";
+               sharedsummary["structchord"]                    = "structchord";
+               sharedsummary["hellinger"]                              = "hellinger";
+               sharedsummary["manhattan"]                              = "manhattan";
+               sharedsummary["structpearson"]                  = "structpearson";
+               sharedsummary["structkulczynski"]               = "structkulczynski";
+               sharedsummary["structchi2"]                             = "structchi2";
+               sharedsummary["soergel"]                                = "soergel";
+               sharedsummary["spearman"]                               = "spearman";
+               sharedsummary["speciesprofile"]                 = "speciesprofile";
+               sharedsummary["hamming"]                                = "hamming";
+               sharedsummary["gower"]                                  = "gower";
+               sharedsummary["memchi2"]                                = "memchi2";
+               sharedsummary["memchord"]                               = "memchord";
+               sharedsummary["memeuclidean"]                   = "memeuclidean";
+               sharedsummary["mempearson"]                             = "mempearson";
                sharedsummary["default"]                                = "default";
        }
        catch(exception& e) {