added groups option to read.otu, added qtrim option to trim.seqs, fixed bug in get...

[mothur.git] / uvest.h

diff --git a/uvest.h b/uvest.h
index 7c7ac6f540be38e2f151568034737a01d16d5d8c..86b96fd43095017afaf2db453ff8523191652708 100644 (file)
--- a/uvest.h
+++ b/uvest.h
@@ -12,13 +12,8 @@
 /* This class implements the UVEst estimator on two groups. 
 It is used by sharedJAbund and SharedSorensonAbund. */
  
- 
-using namespace std;
 
-#include <Carbon/Carbon.h>
-#include <vector>
-#include <iostream>
-#include <fstream>
+#include "mothur.h"
 #include "sharedrabundvector.h"
 
 typedef vector<double> EstOutput;
@@ -26,8 +21,8 @@ typedef vector<double> EstOutput;
 /***********************************************************************/
 class UVEst {
        public:
-               EstOutput getUVest(SharedRAbundVector* shared1, SharedRAbundVector* shared2);           
+               EstOutput getUVest(vector<SharedRAbundVector*>);                
 };
 /***********************************************************************/
 
-#endif
\ No newline at end of file
+#endif