/***********************************************************************/
//This is used by SharedJAbund and SharedSorAbund
-EstOutput UVEst::getUVest(SharedRAbundVector* shared1, SharedRAbundVector* shared2) {
+EstOutput UVEst::getUVest(vector<SharedRAbundVector*> shared) {
try {
EstOutput results;
results.resize(2,0);
sumSharedA1 = the sum of all shared otus in A where B = 1
sumSharedB1 = the sum of all shared otus in B where A = 1 */
- for (int i = 0; i < shared1->size(); i++) {
+ for (int i = 0; i < shared[0]->size(); i++) {
//store in temps to avoid multiple repetitive function calls
- tempA = shared1->getAbundance(i);
- tempB = shared2->getAbundance(i);
+ tempA = shared[0]->getAbundance(i);
+ tempB = shared[1]->getAbundance(i);
Atotal += tempA;
Btotal += tempB;
return results;
}
catch(exception& e) {
- cout << "Standard Error: " << e.what() << " has occurred in the UVEst class Function getUVest. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+ m->errorOut(e, "UVEst", "getUVest");
exit(1);
}
- catch(...) {
- cout << "An unknown error has occurred in the UVEst class Function getUVest. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
- exit(1);
- }
-
-
}
/***********************************************************************/