bool abort, phylip, random, includeRoot, subsample, consensus;
string groups, itersString, outputForm, treefile, groupfile, namefile;
vector<string> Groups, outputNames; //holds groups to be used
- int processors, numUniquesInName, subsampleSize, subsampleIters;
+ int processors, subsampleSize, subsampleIters;
ofstream outSum;
map<string, string> nameMap;