fixed phylo.diversity

[mothur.git] / unifracweightedcommand.h

diff --git a/unifracweightedcommand.h b/unifracweightedcommand.h
index 9c0ad9939221f6a94083cac9300344004e2e707d..77dd10d3490999def3789b91d405ac76e470f360 100644 (file)
--- a/unifracweightedcommand.h
+++ b/unifracweightedcommand.h
@@ -23,7 +23,7 @@ class GlobalData;
 class UnifracWeightedCommand : public Command {
        
        public:
-               UnifracWeightedCommand(string); 
+               UnifracWeightedCommand(string);
                ~UnifracWeightedCommand() { if (abort == false) {  delete weighted; delete util; } }
                int execute();  
                void help();
@@ -39,7 +39,7 @@ class UnifracWeightedCommand : public Command {
                Tree* randT;  //random tree
                TreeMap* tmap;
                Weighted* weighted;
-               string sumFile;
+               string sumFile, outputDir;
                int iters, numGroups, numComp, counter;
                EstOutput userData;                     //weighted score info for user tree
                EstOutput randomData;           //weighted score info for random trees
@@ -51,7 +51,7 @@ class UnifracWeightedCommand : public Command {
                
                bool abort, phylip, random;
                string groups, itersString;
-               vector<string> Groups; //holds groups to be used
+               vector<string> Groups, outputNames; //holds groups to be used
 
                
                ofstream outSum;