public:
UnifracWeightedCommand(string);
+ UnifracWeightedCommand();
~UnifracWeightedCommand() { if (abort == false) { delete weighted; delete util; } }
+ vector<string> getRequiredParameters();
+ vector<string> getValidParameters();
+ vector<string> getRequiredFiles();
+ map<string, vector<string> > getOutputFiles() { return outputTypes; }
int execute();
void help();
map<float, float> validScores; //map contains scores from random
bool abort, phylip, random;
- string groups, itersString;
+ string groups, itersString, outputForm;
vector<string> Groups, outputNames; //holds groups to be used
+ map<string, vector<string> > outputTypes;
int processors;
//void removeValidScoresDuplicates();
int findIndex(float, int);
void calculateFreqsCumuls();
- int createProcesses(Tree*, vector< vector<string> >, vector<double>&, vector< vector<double> >&);
- int driver(Tree*, vector< vector<string> >, int, int, vector<double>&, vector< vector<double> >&);
+ int createProcesses(Tree*, vector< vector<string> >, vector< vector<double> >&);
+ int driver(Tree*, vector< vector<string> >, int, int, vector< vector<double> >&);
};