got rid of extra temp files in dist.seqs

[mothur.git] / unifracweightedcommand.h

diff --git a/unifracweightedcommand.h b/unifracweightedcommand.h
index 751343b3f641d29799c8704d71f6684c04d504ac..491d3846f65ae135d458c947b3f4a7539a5acde8 100644 (file)
--- a/unifracweightedcommand.h
+++ b/unifracweightedcommand.h
@@ -17,7 +17,6 @@
 #include "sharedutilities.h"
 #include "fileoutput.h"
 
-using namespace std;
 
 class GlobalData;
 
@@ -39,7 +38,7 @@ class UnifracWeightedCommand : public Command {
                Tree* randT;  //random tree
                TreeMap* tmap;
                Weighted* weighted;
-               string weightedFile, weightedFileout, sumFile;
+               string sumFile;
                int iters, numGroups, numComp, counter;
                EstOutput userData;                     //weighted score info for user tree
                EstOutput randomData;           //weighted score info for random trees
@@ -59,10 +58,7 @@ class UnifracWeightedCommand : public Command {
                //void removeValidScoresDuplicates();
                int findIndex(float, int);
                void calculateFreqsCumuls();
-               //void initFile(string);
-               //void output(vector<double>);
-               //void resetFile();
-
+               
 };