vector< map<float, float> > rCumul; //map <weighted score, cumulative percentage of number of random trees with that score or higher.> -vector entry for each c
map<float, float> validScores; //map contains scores from random
- bool abort, phylip, random;
+ bool abort, phylip, random, includeRoot;
string groups, itersString, outputForm;
vector<string> Groups, outputNames; //holds groups to be used
map<string, vector<string> > outputTypes;