//subsample loop
vector< vector<double> > calcDistsTotals; //each iter, each groupCombos dists. this will be used to make .dist files
for (int thisIter = 0; thisIter < subsampleIters; thisIter++) { //subsampleIters=0, if subsample=f.
-
if (m->control_pressed) { break; }
//copy to preserve old one - would do this in subsample but memory cleanup becomes messy.
CountTable* newCt = new CountTable();
+ int sampleTime = 0;
+ if (m->debug) { sampleTime = time(NULL); }
+
//uses method of setting groups to doNotIncludeMe
SubSample sample;
Tree* subSampleTree = sample.getSample(T[i], ct, newCt, subsampleSize);
-
+
+ if (m->debug) { m->mothurOut("[DEBUG]: iter " + toString(thisIter) + " took " + toString(time(NULL) - sampleTime) + " seconds to sample tree.\n"); }
+
//call new weighted function
vector<double> iterData; iterData.resize(numComp,0);
Weighted thisWeighted(includeRoot);