map<float, float> validScores; //map contains scores from random
vector< map<float, float> > rscoreFreq; //map <unweighted score, number of random trees with that score.> -vector entry for each combination.
vector< map<float, float> > rCumul; //map <unweighted score, cumulative percentage of number of random trees with that score or higher.> -vector entry for each combination.
- map<float, float>::iterator it2;
- map<float, float>::iterator it;
- OptionParser* parser;
- map<string, string> parameters;
- map<string, string>::iterator it4;
- bool abort;
- string groups, itersString;
+ bool abort, phylip, random;
+ string groups, itersString, outputDir;
vector<string> Groups; //holds groups to be used
ofstream outSum, out;
void printUWSummaryFile(int);
void printUnweightedFile();
+ void createPhylipFile(int);
};
-
-
-#endif
\ No newline at end of file
+#endif