public:
UnifracUnweightedCommand(string);
+ UnifracUnweightedCommand();
~UnifracUnweightedCommand() { globaldata->Groups.clear(); if (abort == false) { delete unweighted; delete util; } }
+ vector<string> getRequiredParameters();
+ vector<string> getValidParameters();
+ vector<string> getRequiredFiles();
+ map<string, vector<string> > getOutputFiles() { return outputTypes; }
int execute();
void help();
vector< map<float, float> > rCumul; //map <unweighted score, cumulative percentage of number of random trees with that score or higher.> -vector entry for each combination.
bool abort, phylip, random;
- string groups, itersString, outputDir;
+ string groups, itersString, outputDir, outputForm;
vector<string> Groups, outputNames; //holds groups to be used
+ map<string, vector<string> > outputTypes;
ofstream outSum, out;
ifstream inFile;