added MPI to dist.seqs command

[mothur.git] / trimseqscommand.h

diff --git a/trimseqscommand.h b/trimseqscommand.h
index ca029616870f97a31482a40497c645e240ae72db..a93eba072eef5f9b6dd62b578331ee862272e76b 100644 (file)
--- a/trimseqscommand.h
+++ b/trimseqscommand.h
@@ -34,11 +34,11 @@ private:
        bool compareDNASeq(string, string);
 
        bool abort;
-       string fastaFile, oligoFile, qFileName;
+       string fastaFile, oligoFile, qFileName, outputDir;
        
        bool flip, allFiles, qtrim;
        int numFPrimers, numRPrimers, maxAmbig, maxHomoP, minLength, maxLength, qThreshold, qAverage;
-       vector<string> forPrimer, revPrimer;
+       vector<string> forPrimer, revPrimer, outputNames;
        map<string, int> barcodes;
        vector<string> groupVector;
 };