forced rarefaction.single to output ending line for all groups. added subsample...

[mothur.git] / trimseqscommand.h

diff --git a/trimseqscommand.h b/trimseqscommand.h
index 5006ce923d00183b0bc22ed08adbfaa6240df247..9ba64c4b62b7c7e87f213472b730a91bd0b37305 100644 (file)
--- a/trimseqscommand.h
+++ b/trimseqscommand.h
@@ -51,6 +51,7 @@ private:
        bool cullLength(Sequence&);
        bool cullHomoP(Sequence&);
        bool cullAmbigs(Sequence&);
+    string reverseOligo(string);
 
        bool abort, createGroup;
        string fastaFile, oligoFile, qFileName, groupfile, nameFile, outputDir;
@@ -169,7 +170,7 @@ struct trimData {
        }
 };
 /**************************************************************************************************/
-#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux)
+#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix)
 #else
 static DWORD WINAPI MyTrimThreadFunction(LPVOID lpParam){ 
        trimData* pDataArray;