TrimOligos trimOligos(pDataArray->pdiffs, pDataArray->bdiffs, pDataArray->ldiffs, pDataArray->sdiffs, pDataArray->primers, pDataArray->barcodes, pDataArray->revPrimer, pDataArray->linker, pDataArray->spacer);
- pDataArray->count = pDataArray->lineEnd;
+ pDataArray->count = 0;
for(int i = 0; i < pDataArray->lineEnd; i++){ //end is the number of sequences to process
if (pDataArray->m->control_pressed) {
string origSeq = currSeq.getUnaligned();
if (origSeq != "") {
+ pDataArray->count++;
int barcodeIndex = 0;
int primerIndex = 0;
string thisGroup = "";
if (pDataArray->createGroup) {
if(pDataArray->barcodes.size() != 0){
- string thisGroup = pDataArray->barcodeNameVector[barcodeIndex];
+ thisGroup = pDataArray->barcodeNameVector[barcodeIndex];
if (pDataArray->primers.size() != 0) {
if (pDataArray->primerNameVector[primerIndex] != "") {
if(thisGroup != "") {