helpString += "maxhomop=yourMaxhomop, minlength=youMinlength, maxlength=yourMaxlength) \n";
helpString += "Example trim.seqs(fasta=abrecovery.fasta, flip=..., oligos=..., maxambig=..., maxhomop=..., minlength=..., maxlength=...).\n";
helpString += "Note: No spaces between parameter labels (i.e. fasta), '=' and parameters (i.e.yourFasta).\n";
- helpString += "For more details please check out the wiki http://www.mothur.org/wiki/Trim.seqs .\n\n";
+ helpString += "For more details please check out the wiki http://www.mothur.org/wiki/Trim.seqs .\n";
return helpString;
}
catch(exception& e) {
if(barcodes.size() != 0){
string thisGroup = barcodeNameVector[barcodeIndex];
- if (primers.size() != 0) { if (primerNameVector[primerIndex] != "") { thisGroup += "." + primerNameVector[primerIndex]; } }
+ if (primers.size() != 0) { thisGroup += "." + primerNameVector[primerIndex]; }
outGroupsFile << currSeq.getName() << '\t' << thisGroup << endl;