if (countfile != "") {
CountTable ct;
- ct.readTable(countfile);
+ ct.readTable(countfile, true);
nameCount = ct.getNameMap();
outputNames.push_back(trimCountFile);
outputNames.push_back(scrapCountFile);
if (countfile != "") { //create countfile with group info included
CountTable* ct = new CountTable();
- ct->readTable(trimCountFile);
+ ct->readTable(trimCountFile, true);
map<string, int> justTrimmedNames = ct->getNameMap();
delete ct;