int stripBarcode(Sequence&, int&);
int stripBarcode(Sequence&, QualityScores&, int&);
int stripBarcode(Sequence&, Sequence&, QualityScores&, QualityScores&, int&);
+ int stripBarcode(Sequence&, Sequence&, int&);
int stripForward(Sequence&, int&);
int stripForward(Sequence&, QualityScores&, int&, bool);
int stripForward(Sequence&, Sequence&, QualityScores&, QualityScores&, int&);
+ int stripForward(Sequence&, Sequence&, int&);
bool stripReverse(Sequence&);
bool stripReverse(Sequence&, QualityScores&);
bool stripSpacer(Sequence&);
bool stripSpacer(Sequence&, QualityScores&);
+
+ //seq, primerStart, primerEnd
+ bool findForward(Sequence&, int&, int&);
+ bool findReverse(Sequence&, int&, int&);
+
private: