bool allFiles;
int processors;
int numFPrimers, numRPrimers;
- int totalFlows, minFlows, minLength, maxLength, maxHomoP, tdiffs, bdiffs, pdiffs;
+ int maxFlows, minFlows, minLength, maxLength, maxHomoP, tdiffs, bdiffs, pdiffs;
int numFlows;
float signal, noise;
bool fasta;
-
+ string flowOrder;
string flowFileName, oligoFileName, outputDir;