bool allFiles;
int processors;
int numFPrimers, numRPrimers;
- int numLinkers, numSpacers;
-
- int maxFlows, minFlows, minLength, maxLength, maxHomoP, tdiffs, bdiffs, pdiffs;
+ int maxFlows, minFlows, minLength, maxLength, maxHomoP, tdiffs, bdiffs, pdiffs, sdiffs, ldiffs, numLinkers, numSpacers;
int numFlows;
float signal, noise;
bool fasta;