added otu.association command. added calcSpearman, calcKendall and calcPearson functi...

[mothur.git] / trimflowscommand.h

diff --git a/trimflowscommand.h b/trimflowscommand.h
index ab8ca91a42b35a9a283a3f9c6f2ee4606a01f7a4..0dc1cd977c9b106b4986e2cb839939cae7541db2 100644 (file)
--- a/trimflowscommand.h
+++ b/trimflowscommand.h
@@ -25,9 +25,9 @@ public:
        
        vector<string> setParameters();
        string getCommandName()                 { return "trim.flows";  }
-       string getCommandCategory()             { return "Hidden";              }
+       string getCommandCategory()             { return "Sequence Processing";         }
        string getHelpString(); 
-       string getCitation() { return "no citation"; }
+       string getCitation() { return "http://www.mothur.org/wiki/Trim.flows"; }
        string getDescription()         { return "trim.flows"; }
 
        
@@ -83,7 +83,7 @@ private:
 //custom data structure for threads to use.
 // This is passed by void pointer so it can be any data type
 // that can be passed using a single void pointer (LPVOID).
-typedef struct trimFlowData {
+struct trimFlowData {
        string flowFileName; 
        string trimFlowFileName; 
        string scrapFlowFileName;