added zap method to classify.seqs and changed bayesian method name to wang.

[mothur.git] / treegroupscommand.h

diff --git a/treegroupscommand.h b/treegroupscommand.h
index 6790afb73984377c1aba8f6488a3cf1c2e544280..b29670ae614205a7ee286116379ddda86f0e7cf9 100644 (file)
--- a/treegroupscommand.h
+++ b/treegroupscommand.h
@@ -15,7 +15,7 @@
 #include "groupmap.h"
 #include "validcalculator.h"
 #include "tree.h"
-#include "treemap.h"
+#include "counttable.h"
 #include "readmatrix.hpp"
 #include "readcolumn.h"
 #include "readphylip.h"
@@ -104,13 +104,13 @@ private:
        
        NameAssignment* nameMap;
        ListVector* list;
-       TreeMap* tmap;
+       CountTable* ct;
        Tree* t;
     InputData* input;
        vector<Calculator*> treeCalculators;
        vector<SharedRAbundVector*> lookup;
        string lastLabel;
-       string format, groupNames, filename, sharedfile, inputfile;
+       string format, groupNames, filename, sharedfile, countfile, inputfile;
        int numGroups, subsampleSize, iters, processors;
        ofstream out;
        float precision, cutoff;