working on testing for 1.13

[mothur.git] / treegroupscommand.cpp

diff --git a/treegroupscommand.cpp b/treegroupscommand.cpp
index 9594767f81ad234a969db760d7cc0be6e1575111..3403b9934dfb9366d066a64ed5552484b2e4275c 100644 (file)
--- a/treegroupscommand.cpp
+++ b/treegroupscommand.cpp
@@ -86,12 +86,12 @@ TreeGroupCommand::TreeGroupCommand(string option)  {
                        phylipfile = validParameter.validFile(parameters, "phylip", true);
                        if (phylipfile == "not open") { abort = true; }
                        else if (phylipfile == "not found") { phylipfile = ""; }        
-                       else {  format = "phylip";  globaldata->setPhylipFile(phylipfile);      }
+                       else {  globaldata->newRead(); format = "phylip";  globaldata->setPhylipFile(phylipfile);       }
                        
                        columnfile = validParameter.validFile(parameters, "column", true);
                        if (columnfile == "not open") { abort = true; } 
                        else if (columnfile == "not found") { columnfile = ""; }
-                       else {  format = "column"; globaldata->setColumnFile(columnfile);       }
+                       else {  globaldata->newRead(); format = "column"; globaldata->setColumnFile(columnfile);        }
                        
                        namefile = validParameter.validFile(parameters, "name", true);
                        if (namefile == "not open") { abort = true; }