added help for heatmap.sim

[mothur.git] / tree.h

diff --git a/tree.h b/tree.h
index 8b77d3ddbed48dddb5de57dfa44394118c7a1920..4f77e50578bad8c234ae4711adf69a612175b088 100644 (file)
--- a/tree.h
+++ b/tree.h
@@ -10,8 +10,6 @@
  *
  */
 
-using namespace std;
-
 #include "treenode.h"
 #include "globaldata.hpp"
 
@@ -36,6 +34,7 @@ public:
        void printTree();
        void print(ostream&);
        void printForBoot(ostream&);
+       int findRoot();  //return index of root node
        
        //this function takes the leaf info and populates the non leaf nodes
        void assembleTree();            
@@ -55,7 +54,6 @@ private:
        void randomBlengths();
        void randomLabels(vector<string>);
        void randomLabels(string, string);
-       int findRoot();  //return index of root node
        void printBranch(int, ostream&, string);  //recursively print out tree
 };