fixed bug in read tree

[mothur.git] / tree.cpp

diff --git a/tree.cpp b/tree.cpp
index 642c6658739dd5252b2d61083ce6af2b872785ec..2cd9cbabc691d692fcb30a7fb9408da8ad22c383 100644 (file)
--- a/tree.cpp
+++ b/tree.cpp
@@ -26,8 +26,6 @@ Tree::Tree() {
                        if (i <= (numLeaves-1)) {
                                tree[i].setName(globaldata->gTreemap->namesOfSeqs[i]);
                                tree[i].setGroup(globaldata->gTreemap->getGroup(globaldata->gTreemap->namesOfSeqs[i]));
-                               //the node knows its index
-                               tree[i].setIndex(i);
                                //set pcount and pGroup for groupname to 1.
                                tree[i].pcount[globaldata->gTreemap->getGroup(globaldata->gTreemap->namesOfSeqs[i])] = 1;
                                tree[i].pGroups[globaldata->gTreemap->getGroup(globaldata->gTreemap->namesOfSeqs[i])] = 1;
@@ -38,8 +36,6 @@ Tree::Tree() {
                        }else if (i > (numLeaves-1)) {
                                tree[i].setName("");
                                tree[i].setGroup("");
-                               //the node knows its index
-                               tree[i].setIndex(i);
                        }
                }
        }
@@ -54,7 +50,6 @@ Tree::Tree() {
 }
 
 /*****************************************************************/
-
 int Tree::getIndex(string searchName) {
        try {
                //Treemap knows name, group and index to speed up search
@@ -157,7 +152,7 @@ map<string, int> Tree::mergeGroups(int i) {
        try {
                int lc = tree[i].getLChild();
                int rc = tree[i].getRChild();
-               
+
                //set parsimony groups to left child
                map<string,int> parsimony = tree[lc].pGroups;