1.18.0

[mothur.git] / systemcommand.h

diff --git a/systemcommand.h b/systemcommand.h
index 410a12e7657a1c0625281429e261a519dccf45ef..8c959cfb52302df67651a4196ea533751ad596a1 100644 (file)
--- a/systemcommand.h
+++ b/systemcommand.h
@@ -18,13 +18,22 @@ class SystemCommand : public Command {
        public:
        
                SystemCommand(string);  
-               ~SystemCommand(){};
-               int execute();
-               void help();    
-               
+               SystemCommand() { setParameters(); abort = true; calledHelp = true; }
+               ~SystemCommand(){}
+       
+               vector<string> setParameters();
+               string getCommandName()                 { return "system";              }
+               string getCommandCategory()             { return "General";             }
+               string getHelpString(); 
+       
+               int execute(); 
+               void help() { m->mothurOut(getHelpString()); }  
+       
        private:
                string command;
                bool abort;
+               vector<string> outputNames;
+               
                
 };