map<string, string> name2seq;
map<string, string>::iterator iter;
-Transcripts transcripts;
+Transcripts transcripts(1); // no genome, just transcript set
char groupF[STRLEN], tiF[STRLEN], refFastaF[STRLEN], chromListF[STRLEN];
bool hasMappingFile;
}
int main(int argc, char* argv[]) {
- if (argc < 5 || (hasMappingFile = atoi(argv[3])) && argc < 6) {
+ if (argc < 5 || ((hasMappingFile = atoi(argv[3])) && argc < 6)) {
printf("Usage: synthesisRef refName quiet hasMappingFile [mappingFile] reference_file_1 [reference_file_2 ...]\n");
exit(-1);
}