vector<string> setParameters();
string getCommandName() { return "summary.shared"; }
string getCommandCategory() { return "OTU-Based Approaches"; }
- string getOutputFileNameTag(string, string);
+
string getHelpString();
+ string getOutputPattern(string);
string getCitation() { return "http://www.mothur.org/wiki/Summary.shared"; }
string getDescription() { return "generate a summary file containing calculator values for each line in the OTU data and for all possible comparisons between groups"; }
unsigned long long end;
MothurOut* m;
string sumFile;
+ int count;
summarySharedData(){}
summarySharedData(string sf, MothurOut* mout, unsigned long long st, unsigned long long en, vector<string> est, vector<SharedRAbundVector*> lu) {
end = en;
Estimators = est;
thisLookup = lu;
+ count=0;
}
};
/**************************************************************************************************/
vector<SharedRAbundVector*> subset;
for (int k = pDataArray->start; k < pDataArray->end; k++) { // pass cdd each set of groups to compare
-
+ pDataArray->count++;
for (int l = 0; l < k; l++) {
outputFileHandle << pDataArray->thisLookup[0]->getLabel() << '\t';