added warning about merging with something above cutoff to cluster. working on chimeras

[mothur.git] / summarysharedcommand.h

diff --git a/summarysharedcommand.h b/summarysharedcommand.h
index 63197e199493aba98106c43378340e4e394fdda1..351b1352b7e865d8c0741ffb56875407070db344 100644 (file)
--- a/summarysharedcommand.h
+++ b/summarysharedcommand.h
@@ -34,12 +34,12 @@ private:
        InputData* input;
        ValidCalculators* validCalculator;
        
-       bool abort, allLines, mult;
+       bool abort, allLines, mult, all;
        set<string> labels; //holds labels to be used
        string label, calc, groups;
        vector<string>  Estimators, Groups;
        vector<SharedRAbundVector*> lookup;
-       string outputFileName, format, outAllFileName;
+       string outputFileName, format, outAllFileName, outputDir;
        ofstream outputFileHandle, outAll;
        void process(vector<SharedRAbundVector*>);