added warning about merging with something above cutoff to cluster. working on chimeras

[mothur.git] / summarysharedcommand.h

diff --git a/summarysharedcommand.h b/summarysharedcommand.h
index 119a75c47438a85460b4b798501edbf0807569c0..351b1352b7e865d8c0741ffb56875407070db344 100644 (file)
--- a/summarysharedcommand.h
+++ b/summarysharedcommand.h
@@ -33,16 +33,13 @@ private:
        vector<Calculator*> sumCalculators;     
        InputData* input;
        ValidCalculators* validCalculator;
-       SharedListVector* SharedList;
-       OptionParser* parser;
-       map<string, string> parameters;
-       map<string, string>::iterator it;
-       bool abort, allLines, mult;
+       
+       bool abort, allLines, mult, all;
        set<string> labels; //holds labels to be used
        string label, calc, groups;
        vector<string>  Estimators, Groups;
        vector<SharedRAbundVector*> lookup;
-       string outputFileName, format, outAllFileName;
+       string outputFileName, format, outAllFileName, outputDir;
        ofstream outputFileHandle, outAll;
        void process(vector<SharedRAbundVector*>);