#include "inputdata.h"
#include "calculator.h"
#include "readotu.h"
-#include "sharedlistvector.h"
#include "validcalculator.h"
-#include "sharedutilities.h"
+
/*The summary.shared() command
The summary.shared command can only be executed after a successful read.shared command.
private:
GlobalData* globaldata;
ReadOTUFile* read;
- SharedUtil* util;
vector<Calculator*> sumCalculators;
InputData* input;
ValidCalculators* validCalculator;
SharedListVector* SharedList;
- SharedOrderVector* order;
vector<SharedRAbundVector*> lookup;
- string outputFileName, format;
- ofstream outputFileHandle;
+ string outputFileName, format, outAllFileName;
+ ofstream outputFileHandle, outAll;
+ bool mult;
+ void process(vector<SharedRAbundVector*>);
};