public:
SummarySharedCommand(string);
+ SummarySharedCommand();
~SummarySharedCommand();
+ vector<string> getRequiredParameters();
+ vector<string> getValidParameters();
+ vector<string> getRequiredFiles();
+ map<string, vector<string> > getOutputFiles() { return outputTypes; }
int execute();
void help();
set<string> labels; //holds labels to be used
string label, calc, groups;
vector<string> Estimators, Groups, outputNames;
+ map<string, vector<string> > outputTypes;
vector<SharedRAbundVector*> lookup;
string format, outputDir;
int numGroups, processors;