#include "sharedsorest.h"
#include "sharedthetayc.h"
#include "sharedthetan.h"
+#include "sharedkstest.h"
+#include "sharedbdiversity.h"
+#include "sharedochiai.h"
+#include "sharedanderbergs.h"
+#include "sharedkulczynski.h"
+#include "sharedkulczynskicody.h"
+#include "sharedlennon.h"
+#include "sharedmorisitahorn.h"
+#include "sharedbraycurtis.h"
//**********************************************************************************************************************
sumCalculators.push_back(new SharedThetaYC());
}else if (globaldata->Estimators[i] == "sharedthetan") {
sumCalculators.push_back(new SharedThetaN());
+ }else if (globaldata->Estimators[i] == "sharedkstest") {
+ sumCalculators.push_back(new SharedKSTest());
}else if (globaldata->Estimators[i] == "sharednseqs") {
sumCalculators.push_back(new SharedNSeqs());
+ }else if (globaldata->Estimators[i] == "sharedochiai") {
+ sumCalculators.push_back(new SharedOchiai());
+ }else if (globaldata->Estimators[i] == "sharedanderberg") {
+ sumCalculators.push_back(new SharedAnderberg());
+ }else if (globaldata->Estimators[i] == "sharedkulczynski") {
+ sumCalculators.push_back(new SharedKulczynski());
+ }else if (globaldata->Estimators[i] == "sharedkulczynskicody") {
+ sumCalculators.push_back(new SharedKulczynskiCody());
+ }else if (globaldata->Estimators[i] == "sharedlennon") {
+ sumCalculators.push_back(new SharedLennon());
+ }else if (globaldata->Estimators[i] == "sharedmorisitahorn") {
+ sumCalculators.push_back(new SharedMorHorn());
+ }else if (globaldata->Estimators[i] == "sharedbraycurtis") {
+ sumCalculators.push_back(new SharedBrayCurtis());
}
+ else if (globaldata->Estimators[i] == "sharedbdiversity") {
+ sumCalculators.push_back(new SharedBDiversity());
+ }
+
}
}
-
//reset calc for next command
globaldata->setCalc("");
int n = 1;
for (int k = 0; k < (lookup.size() - 1); k++) { // pass cdd each set of groups to commpare
for (int l = n; l < lookup.size(); l++) {
+ outputFileHandle << order->getLabel() << '\t' << (lookup[k]->getGroup() + lookup[l]->getGroup()) << '\t' << '\t'; //print out label and group
outputFileHandle << order->getLabel() << '\t';
//sort groups to be alphanumeric