if (namefile != "") { nameMap = m->readNames(namefile); }
else if (countfile != "") {
CountTable ct;
- ct.readTable(countfile);
+ ct.readTable(countfile, false);
nameMap = ct.getNameMap();
}
//Close all thread handles and free memory allocations.
for(int i=0; i < pDataArray.size(); i++){
- numSeqs += pDataArray[i]->count;
+ numSeqs += pDataArray[i]->numSeqs;
+ if (pDataArray[i]->count != pDataArray[i]->end) {
+ m->mothurOut("[ERROR]: process " + toString(i) + " only processed " + toString(pDataArray[i]->count) + " of " + toString(pDataArray[i]->end) + " sequences assigned to it, quitting. \n"); m->control_pressed = true;
+ }
int tempNum = pDataArray[i]->position.size();
if (position.size() < tempNum) { position.resize(tempNum, 0); }
if (averageQ.size() < tempNum) { averageQ.resize(tempNum, 0); }