added distance command and filterseqs

[mothur.git] / summarycommand.h

diff --git a/summarycommand.h b/summarycommand.h
index c03a6c61b34cef50b064593e346518d4ad741083..8f42f459bf2de9a6c12679a42ea8bbf35c7835a1 100644 (file)
--- a/summarycommand.h
+++ b/summarycommand.h
@@ -9,14 +9,12 @@
  *
  */
 
-#include <iostream>
-#include <fstream>
-#include <vector>
 #include "command.hpp"
 #include "sabundvector.hpp"
 #include "inputdata.h"
 #include "calculator.h"
-#include "readmatrix.hpp"
+#include "readotu.h"
+#include "validcalculator.h"
 
 /* The summary() command:
        The summary command can only be executed after a successful read.list, read.sabund or read.rabund command, with one exception. 
@@ -41,11 +39,13 @@ public:
        
 private:
        GlobalData* globaldata;
-       ReadMatrix* read;
+       ReadOTUFile* read;
        vector<Calculator*> sumCalculators;     
        InputData* input;
+       ValidCalculators* validCalculator;
        SAbundVector* sabund;
        string outputFileName;
        ofstream outputFileHandle;
+       int abund;
 };
 #endif