added distance command and filterseqs

[mothur.git] / summarycommand.h

diff --git a/summarycommand.h b/summarycommand.h
index 8e2d74b0b52252250cd5cede8a1bf9b10a689449..8f42f459bf2de9a6c12679a42ea8bbf35c7835a1 100644 (file)
--- a/summarycommand.h
+++ b/summarycommand.h
@@ -9,14 +9,11 @@
  *
  */
 
-#include <iostream>
-#include <fstream>
-#include <vector>
 #include "command.hpp"
 #include "sabundvector.hpp"
 #include "inputdata.h"
 #include "calculator.h"
-#include "readmatrix.hpp"
+#include "readotu.h"
 #include "validcalculator.h"
 
 /* The summary() command:
@@ -42,12 +39,13 @@ public:
        
 private:
        GlobalData* globaldata;
-       ReadMatrix* read;
+       ReadOTUFile* read;
        vector<Calculator*> sumCalculators;     
        InputData* input;
        ValidCalculators* validCalculator;
        SAbundVector* sabund;
        string outputFileName;
        ofstream outputFileHandle;
+       int abund;
 };
 #endif