SAbundVector* sabund;
int abund, size;
- bool abort, allLines;
+ bool abort, allLines, groupMode;
set<string> labels; //holds labels to be used
- string label, calc;
+ string label, calc, outputDir;
vector<string> Estimators;
vector<string> inputFileNames;
vector<string> groups;
vector<string> parseSharedFile(string);
+ string createGroupSummaryFile(int, int, vector<string>&);
};