added clearcut source to mothur, fixed mislabeled sharedcalcs

[mothur.git] / summarycommand.h

diff --git a/summarycommand.h b/summarycommand.h
index 1258c650179a73afd9bcc85e56bfee92dca1d996..6b3fa69c67e46cd92d44f0064404d2743dd29b7a 100644 (file)
--- a/summarycommand.h
+++ b/summarycommand.h
@@ -35,14 +35,15 @@ private:
        SAbundVector* sabund;
        int abund, size;
 
-       bool abort, allLines;
+       bool abort, allLines, groupMode;
        set<string> labels; //holds labels to be used
-       string label, calc;
+       string label, calc, outputDir;
        vector<string>  Estimators;
        vector<string> inputFileNames;
        vector<string> groups;
        
        vector<string> parseSharedFile(string);
+       string createGroupSummaryFile(int, int, vector<string>);
 
 
 };