vector<string> setParameters();
string getCommandName() { return "summary.single"; }
string getCommandCategory() { return "OTU-Based Approaches"; }
+ string getOutputFileNameTag(string, string);
string getHelpString();
string getCitation() { return "http://www.mothur.org/wiki/Summary.single"; }
string getDescription() { return "generate summary file that has the calculator value for each line in the OTU data"; }
vector<string> parseSharedFile(string);
vector<string> createGroupSummaryFile(int, int, vector<string>&, map<string, string>);
- int process(SAbundVector*&, ofstream&, ofstream&, ofstream&);
+ int process(SAbundVector*&, ofstream&, ofstream&);
};