*
*/
-#include <iostream>
-#include <fstream>
-#include <vector>
#include "command.hpp"
#include "sabundvector.hpp"
#include "inputdata.h"
#include "calculator.h"
-#include "readmatrix.hpp"
+#include "readotu.h"
#include "validcalculator.h"
/* The summary() command:
private:
GlobalData* globaldata;
- ReadMatrix* read;
+ ReadOTUFile* read;
vector<Calculator*> sumCalculators;
InputData* input;
ValidCalculators* validCalculator;
SAbundVector* sabund;
string outputFileName;
ofstream outputFileHandle;
- int abund;
+ int abund, size;
};
#endif