#include "mothur.h"
-using namespace std;
-
class SuffixNode;
//********************************************************************************************************************
public:
SuffixTree();
~SuffixTree();
-// SuffixTree(string, string);
- void loadSequence(Sequence*);
+ void loadSequence(Sequence);
string getSeqName();
void print();
int countSuffixes(string, int&);
+ int countSuffixes(string);
private:
void addPrefix(int);
int nodeCounter;
string seqName;
string sequence;
+ MothurOut* m;
};